Study explains why both loss-of-function and duplication variants affect complex traits in the same direction
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@nikhilmilind.dev
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Summary
Milind et al. investigate a paradox in human genetics: why loss-of-function variants (which decrease gene expression) and duplications (which increase expression) tend to have effects in the same direction on 94 complex traits, rather than opposite effects as intuition would suggest. Using gene dosage response curves (GDRCs), they gather evidence for two explanatory models and interpret what these observations imply about the genetic architecture of complex traits. The findings suggest that for most complex traits, the genome-wide burden of both types of variants push phenotypes in the same direction, challenging simple assumptions about gene dosage effects.
Key quotes
· 3 pulledCuriously, for most of these traits, variants that decrease expression have the same genome-wide average direction of effect as variants that increase expression.
This seemingly contradicts the intuition that for individual genes, reducing expression should have the opposite effect on a phenotype as increasing expression.
To understand this paradox, we use the gene dosage response curve (GDRC), which relates changes in gene expression to expected changes in phenotype.
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